glidertools.optics.quenching_report¶
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glidertools.optics.
quenching_report
(flr, flr_corrected, quenching_layer, dives, depth, pcolor_kwargs={})¶ A report for the results of optics.quenching_correction.
The function creates a figure object of 3 subplots containing a pcolormesh of the original fluorescence data, the quenching corrected fluorescence data and the quenching layer calculated from the optics.quenching_correction function.
Parameters: - flr (numpy.ndarray or pandas.Series) – Fluorescence data after cleaning and factory calibration conversion.
- flr_corrected (numpy.ndarray or pandas.Series) – The fluorescence data corrected for quenching.
- layer (quenching) – A boolean mask of where the fluorescence is quenched.
- dives (numpy.ndarray or pandas.Series) – The dive count (round is down dives, 0.5 is up dives).
- depth (numpy.ndarray or pandas.Series) – The depth array in metres.
- pcolor_kwargs (dict) – A dictionary of keyword arguements passed to pcolormesh.
Returns: figure – Creates a figure object with 3 subplots containing a pcolormesh of the original fluorescence data, the quenching corrected fluorescence data and the quenching layer calculated from the optics.quenching_correction function.
Return type: object